Chemistry

Atomic Structure

What atoms are made of and how their electrons behave.

The Atom

An atom is the smallest particle of an element that can still take part in a chemical reaction. Every atom is built from three subatomic particles: the proton and neutron, which sit together in the tiny, dense nucleus at the centre, and the electron, found in the mostly-empty space around it.

Nucleusprotons + neutronsElectronnegatively charged,found in orbitalsProtoncharge +1, mass ≈ 1Neutroncharge 0, mass ≈ 1Electroncharge −1, mass ≈ 1/1840
The structure of an atom: a nucleus of protons and neutrons, surrounded by electrons.

An atom is about 10⁻¹⁰ m across, but its nucleus is only 10⁻¹⁴ to 10⁻¹⁵ m across: more than 10,000 times smaller. Almost all of an atom's mass is packed into that tiny nucleus.

Behaviour in an Electric Field

Behaviour in an electric field reveals the three particles' charges directly. Fire beams of protons, neutrons and electrons, all at the same speed, between two charged plates:

−+beamentersneutron (0)not deflectedproton (+1)x° toward − plateelectron (−1)y° toward + plate(y > x)the lighter electron swings through a far bigger angle
Deflection of proton, neutron and electron beams in a uniform electric field.
  • The neutron beam is undeflected: it carries no charge.
  • The proton beam curves toward the negative plate.
  • The electron beam curves toward the positive plate, through a much larger angle.

The direction of deflection depends only on the sign of the charge. The size of the deflection depends on the charge-to-mass ratio:

angle of deflection∝|charge|mass

A proton and an electron carry the same magnitude of charge, but the electron is about 1840× lighter, so it swings through a far bigger angle for the same field.

Given a deflection angle for one particle, you can work out the expected angle for any other charged particle by comparing their charge-to-mass ratios directly.

Example

If ¹H⁺ deflects at an angle of +40°, what angle will ²H⁺ deflect to?

²H⁺ has twice the mass of ¹H⁺, but the same charge, so its charge-to-mass ratio is half as big, and it deflects at roughly half the angle: +20°.

Nuclides

AZXA: mass number = protons + neutronsZ: atomic number = protons = the element
Nuclide notation: A (mass number) sits above Z (atomic number), both to the left of the element's symbol.

For a neutral atom, number of electrons = number of protons = Z.

For an ion, adjust for the charge: an anion has Z + |charge| electrons, a cation has Z − |charge| electrons.

Isotopes

Isotopes

Atoms of the same element (same Z) with different numbers of neutrons, so a different A.

Because isotopes have identical electron arrangements, they have the same chemical properties. But because their masses differ, their physical properties differ too.

Example

Cl3517 and Cl3717 both form NaCl the same way: same chemical properties.

Cl3717₂ is very slightly denser than Cl3517₂: different physical properties.

Electrons

Electrons in an atom don't occupy fixed positions around the nucleus or move in fixed orbits (circular or elliptical paths) around it.

  • Electrons are found in regions of space around the nucleus, called atomic orbitals.
  • Each electron has energy that is quantised (energy restricted to certain values) and occupies a discrete energy level.

Electronic structure

The arrangement of electrons in an atom or ion.

Electronic structure tells you three things about an atom or ion:

  • The number of electrons it has.
  • How those electrons are distributed.
  • The energies of those electrons.

It matters because it determines how the atom reacts with other atoms to form ions or molecules.

Electrons around the nucleus are organised in a hierarchy:

Outside the nucleus → shells → subshells → orbitals.

Electronic Shells

Electrons in atoms are arranged in a series of shells (or energy levels) surrounding the nucleus. Each electron shell is described by a number known as the principal quantum number, n.

The principal quantum number n is a positive integer: n = 1, 2, 3, …, numbered outward from the nucleus.

The greater the value of n:

  • The further the electron shell (or electron) is from the nucleus.
  • The higher the energy level of the electron shell (or electron).
  • The weaker the electrostatic attraction between the nucleus and the electron.
  • The larger the size of the orbital (or the more diffuse the orbital becomes).
Electron shellsEnergy levelsn = 1n = 2n = 3n = 4n = 5n = 6n = 7energyn = 1n = 2n = 3n = 4n = 5n = 6n = 7n = ∞
Electron shells and their corresponding energy levels, for the principal quantum numbers n = 1 to 7 (spacing compresses as n grows).

Subshells

Each shell contains one or more subshells: s, p, d, f.

Principal quantum number, nTypes of subshell
11s
22s, 2p
33s, 3p, 3d
44s, 4p, 4d, 4f

The electron shell with principal quantum number n contains n subshells.

Within the same shell, subshell energy increases in the order s, p, d, f. So within shell n = 4, energy rises 4s → 4p → 4d → 4f.

Each subshell is itself made up of one or more orbitals. An orbital holds a maximum of 2 electrons.

Shell n = 2 → subshells → orbitalsn = 2 shell2s subshell2p subshell1 orbital (2s)2px2py2pzmax 2 electrons3 orbitals × 2 electrons each = max 6n = 2 shell holds up to 2 + 6 = 8 electrons
Worked example: the n = 2 shell splits into the 2s and 2p subshells, which split into 1 and 3 orbitals respectively.

Add up every subshell's orbitals and a shell's total capacity works out to 2n² electrons: 2 for n = 1, 8 for n = 2 (2 + 6, as above), 18 for n = 3.

Orbitals

An orbital represents a region of space with a high probability (>95%) of containing an electron.

  • Each orbital can hold a maximum of 2 electrons.
  • Each orbital has its own distinctive geometrical shape.
  • The energy of an orbital is the energy of the electron occupying it.

Every subshell is made up of one or more orbitals: s has 1, p has 3, d has 5, f has 7.

s orbitalsspherical, non-directional, 1 per shellzxy1szxy2szxy3sbigger and more diffuse as n increases (1s < 2s < 3s)
s orbitals are spherical and non-directional: the same shape at every shell, just bigger and more diffuse as n increases (1s < 2s < 3s).
p orbitalsdumbbell-shaped, directional, 3 per subshell (first at n = 2)zxypxzxypyzxypz
p orbitals are dumbbell-shaped and directional, pointing along the x, y or z axis (px, py, pz). 3 per subshell, all the same energy, first appearing at n = 2.
d orbitalsmostly 4-lobed clovers except dz², 5 per subshell (first at n = 3)xydxyxzdxzyzdyzzxydx²−y²xyzdz²
d orbitals are mostly 4-lobed clovers (dxy, dyz, dxz, dx²−y²), except dz², a dumbbell with a ring around its middle. 5 per subshell, all the same energy, first appearing at n = 3.
Relative energies of the orbitals (not to scale)energyn = 1n = 2n = 3n = 41s2s2p3s3p3d4s4p4d4fShellSubshells3d sits above 4s(smaller n ≠ lower energy)
Relative energies of the orbitals. Within a shell, energy rises s < p < d < f, but across shells, 3d actually sits above 4s.

Writing Electronic Configurations

An atom's electronic configuration describes how its electrons are distributed among orbitals. There are three equivalent ways to write it: shell notation, full spdf notation, or noble-gas-core notation.

Example

Silicon (Z = 14)

Shell notation: 2.8.4 (rarely used)

Full spdf notation: 1s² 2s² 2p⁶ 3s² 3p²

Noble-gas-core notation: [Ne] 3s² 3p²

Aufbau ("building-up") principle: electrons fill the lowest-energy orbital available first. Filling order: 1s → 2s → 2p → 3s → 3p → 4s → 3d → 4p → 5s → 4d → … Note that 4s fills before 3d, even though 3d is written after 4s in the final configuration.

Aufbau filling orderread top-right to bottom-left, diagonal by diagonalspdf1s2s2p3s3p3d4s4p4d4f5s5p5d5f6s6p6d7s4s ends one diagonal, 3d starts the next — 4s fills first, even though 3d is written before it
The Aufbau filling order. Note the 4s → 3d step, the one everyone trips on.

Hund's rule: within a subshell (degenerate orbitals), electrons occupy orbitals singly, with parallel spins, before any pairing occurs.

Hund's rulefill each orbital singly, with parallel spins, before any pairing2p2p2p
Hund's rule: fill 2p singly, with parallel spins, before pairing. Not with a spin flipped early, and not paired up before every orbital has one electron.

Pauli exclusion principle: an orbital holds at most 2 electrons, and if it holds 2, they must have opposite spins.

Pauli exclusion principleat most 2 electrons per orbital — and if 2, opposite spins
Pauli exclusion: a full orbital always holds one spin-up and one spin-down electron, never two of the same spin.

Example

Vanadium (Z = 23): 1s² 2s² 2p⁶ 3s² 3p⁶ 3d³ 4s²

V (Z = 23)electrons-in-boxes diagram1s2s2p3s3p3d4s4s fills and pairs first; 3d's three electrons then go in singly(Hund's rule), one per orbital, before any pairing.

Anomalous Electronic Configurations

Anomalies: Cr and Cu. Both break the expected pattern because a half-filled (d⁵) or fully-filled (d¹⁰) d subshell is more stable: the electron cloud is spread out as symmetrically as possible, minimising repulsion.

Example

Expected Cr: [Ar] 3d⁴ 4s²

Actual Cr: [Ar] 3d⁵ 4s¹

Expected Cu: [Ar] 3d⁹ 4s²

Actual Cu: [Ar] 3d¹⁰ 4s¹

Ground State vs Excited State

The ground state is an atom's lowest-energy, most stable configuration: the one most atoms are in at room temperature, and the one every electronic configuration covered so far describes.

If one or more electrons absorb energy and are promoted to a higher energy level, the atom enters an excited state instead. Excited atoms are unstable, and emit energy to fall back down to the ground state.

Ions

To find an ion's electronic configuration, start from the parent atom's configuration, then adjust for the charge it carries.

Anions

Formed when an atom gains electrons. The extra electrons go into the next available orbital.

Cations

Formed when an atom loses electrons. Electrons are removed from the highest-energy occupied orbital first, typically the outermost shell. For d-block cations specifically, 4s electrons are removed before 3d electrons, since once electrons are present, 4s sits at a higher energy than 3d.

Example

S: 1s²2s²2p⁶3s²3p⁴ → S²⁻: 1s²2s²2p⁶3s²3p⁶

Al: [Ne] 3s²3p¹ → Al³⁺: 1s²2s²2p⁶

Fe: [Ar] 3d⁶4s² → Fe²⁺: [Ar] 3d⁶, not [Ar] 3d⁴4s²

Why does 4s fill before 3d, but empty first?

While an atom is being "built up" from scratch, 4s is briefly the lower-energy option: it's more diffuse and spreads out further, reducing electron-electron repulsion, so it fills first.

But once electrons are actually present in both 4s and 3d, the compact, closer-to-the-nucleus 3d electrons end up more strongly held than the diffuse 4s ones. So 4s becomes the higher-energy orbital, and the first one removed, when forming a cation.

Isoelectronic Species

Isoelectronic species have the same total number of electrons, though not necessarily the same configuration.

Example

N³⁻, O²⁻, F⁻, Ne and Na⁺ are all isoelectronic with 10 electrons each.

All share the configuration 1s²2s²2p⁶.

Electronic Configuration and the Periodic Table

The last subshell an element's electrons fill determines which block it sits in: s, p, d or f.

s, p, d and f blocksblock name = which subshell the last electron enterss-blockGroups 1–2d-blockGroups 3–12 (transition metals)p-blockGroups 13–18f-block (lanthanoids / actinoids)
The s, p, d and f blocks of the Periodic Table, by which subshell each element's last electron enters.

Horizontal rows in the Periodic Table are called periods. Elements in the same period have the same number of electron shells. The period number of an element is the number of electron shells occupied with electrons in an atom of that element.

Vertical columns in the Periodic Table are called groups. Elements in the same group have the same number of valence electrons, and hence similar outer electron configurations.

Example

Bromine is Group 17, Period 4.

Group 17 → valence shell: 4s²4p⁵

Period 4 → 4 electron shells occupied

Group number (s/p block) fixes valence configuration; period number fixes the number of occupied electron shells; block = subshell of the last electron added.

Electrostatic Effects

Electrostatic effects

The attraction of opposite charges and the repulsion of like charges. These effects play a major role in determining the energy states of atoms, and so influence atomic properties such as atomic size and ionisation energy.

Three main factors affect the strength of the electrostatic attraction between the nucleus and the electrons:

  • Number of electron shells: more shells means a higher principal quantum number (n) for the outermost shell, and more inner-shell electrons. Electrostatic attraction between the nucleus and the outermost electron decreases.
  • Nuclear charge, Z: more protons means a greater nuclear charge. Electrostatic attraction between the nucleus and the outermost electron increases.
  • Shielding (screening) effect: shielding by electrons in the same shell (including the outermost shell) is small; shielding from inner-shell electrons is far more significant.

Across a period, it's nuclear charge and shielding (factors 2 and 3) that are considered. Down a group, all three factors apply, but shielding is the most significant, because the number of electron shells increases: more inner-shell electrons means more shielding for the outermost electron, so electrostatic attraction to the nucleus decreases.

These three factors explain the trends covered next: atomic radius and ionic radius, first ionisation energy across a period and down a group, successive ionisation energies, and electronegativity.

Nuclear Charge and Shielding

Shielding of an outer electron+Zeweakened attractionrepulsion (shielding)outer electroninner-shell electrons(the shield)inner electrons repel the outer electron, weakening the pull it feels from the nucleus
Inner-shell electrons repel an outer electron, weakening the attraction it feels from the nucleus.

Effective nuclear charge

The net attraction actually felt by an outer electron, roughly nuclear charge minus shielding. When both nuclear charge and shielding increase at once, you have to judge which effect wins.

Shielding ability of electrons in the same shell decreases in the order s > p > d > f. d and f electrons are especially poor at shielding.

  • More shells → weaker attraction. More protons → stronger attraction. More (inner) shielding → weaker attraction.
  • Same-shell electrons barely shield each other; inner-shell electrons shield strongly.
  • "Effective nuclear charge" = the net pull an outer electron actually feels, after accounting for shielding.

Atomic Radius

Atomic radius

Half the shortest inter-nuclear distance found in the structure of the element.

This isn't a single fixed number: it depends on how the atom is bonded to its neighbours, so chemists define it three different ways.

Metallic radiusCovalent radiusVan der Waals radius½ d½ d½ dhalf the distance betweenneighbouring atoms in a metale.g. r(Mg) = 0.160 nmhalf the distance between twocovalently-bonded atomse.g. r(Cl) = 0.099 nmhalf the distance between twonon-bonded, touching atomse.g. r(Ar) = 0.190 nm
Three working definitions of atomic radius, depending on how the atom is bonded to its neighbours.
  • Metallic radius: half the distance between neighbouring atoms in a metallic lattice. Only applies to metals.
  • Covalent radius: half the distance between two covalently-bonded atoms.
  • Van der Waals radius: half the distance between two non-bonded, touching atoms. The only option for the noble gases, which don't form bonds.

Variation in Atomic Radius

Atomic radius vs proton number (Z = 1–36)Period 2Period 3Period 40.000.050.100.150.20HHeLiBeBCNOFNeNaMgAlSiPSClArKCaScTiVCrMnFeCoNiCuZnGaGeAsSeBrKrproton number (atomic number)atomic radius / nm
Atomic radius against proton number, Z = 1–36. A steady fall across each period, and a sharp jump back up at every noble-gas-to-alkali-metal boundary.
↓

Across a period, atomic radius decreases.

  • The number of electron shells stays the same.
  • The number of protons increases, so nuclear charge increases.
  • The added electrons go into the same outermost shell, so shielding stays roughly constant, since same-shell electrons barely shield each other.
  • Electrostatic attraction between the nucleus and the valence electrons increases, pulling the electron cloud in tighter.
↑

Down a group, atomic radius increases.

  • The number of electron shells increases.
  • The number of protons also increases, so nuclear charge increases.
  • But the extra electron shells mean significantly more shielding from inner-shell electrons.
  • This increase in shielding outweighs the increase in nuclear charge, so electrostatic attraction to the outermost electron decreases, and the size of the electron cloud increases.

Ionic Radius

Ionic radius

The radius of an ion within an ionic compound.

↓

Cations are always smaller than their parent atom.

  • Both the cation and its parent atom have the same number of protons, and hence have the same nuclear charge.
  • However, the cation has one less electron shell than its parent atom, so the outermost electrons are shielded to a smaller extent, as there are fewer inner-shell electrons.
  • Electrostatic attraction between the nucleus and the outermost electrons is stronger in the cation, resulting in the cation having a smaller electron cloud and a smaller radius than its parent atom.
CationMg0.160 nmloses outer shell → shrinksMg²⁺0.065 nm
A cation shrinks relative to its parent atom. Drawn to scale from the Mg/Mg²⁺ radii.
↑

Anions are always larger than their parent atom.

  • Both the anion and its parent atom have the same number of protons, and hence have the same nuclear charge.
  • But the anion has more electrons packed into the same outer shell as its parent atom, increasing electron-electron repulsion between them.
  • That extra repulsion (a same-shell shielding effect) is enough to expand the electron cloud, even without adding a new shell, resulting in the anion having a larger radius than its parent atom.
AnionS0.104 nmgains electrons → growsS²⁻0.184 nm
An anion grows relative to its parent atom. Drawn to scale from the S/S²⁻ radii.

Ionic Radius of Isoelectronic Species

Atomic and ionic radii of Period 3 (Na → Cl)0.000.050.100.150.20NaMgAlSiPSClNa⁺Mg²⁺Al³⁺Si⁴⁺P³⁻S²⁻Cl⁻anionic radiusatomic radiuscationic radiusatomic numberatomic or ionic radius / nm
Atomic and ionic radii across Period 3. The 10-electron cations and 18-electron anions each shrink along their own series, with a sharp jump between them where a whole electron shell disappears.
↓

Ionic radii decrease from Na⁺ to Al³⁺.

  • Na⁺, Mg²⁺ and Al³⁺ are isoelectronic species, so their outermost electrons experience the same shielding effect.
  • Nuclear charge increases from Na⁺ to Al³⁺.
  • Electrostatic attraction between the nucleus and the outermost electrons increases from Na⁺ to Al³⁺, decreasing the size of the electron cloud.

Example

Na⁺, Mg²⁺ and Al³⁺ all have 10 electrons.

Na⁺ (0.095 nm) > Mg²⁺ (0.065 nm) > Al³⁺ (0.050 nm)

Example

P³⁻, S²⁻ and Cl⁻ all have 18 electrons.

P³⁻ (0.212 nm) > S²⁻ (0.184 nm) > Cl⁻ (0.181 nm)

↑

The ionic radius of P³⁻ is bigger than that of Al³⁺.

Al³⁺ (0.050 nm) → P³⁻ (0.212 nm)

  • From Al³⁺ to P³⁻, the number of electron shells increases.
  • Shielding experienced by the outermost electrons increases significantly, as there are now more inner-shell electrons.
  • Despite the increasing nuclear charge, electrostatic attraction between the nucleus and the outermost electrons decreases, increasing the size of the electron cloud.

Ionisation Energy

First ionisation energy (1st IE)

The energy required to remove 1 mole of electrons from 1 mole of gaseous M atoms to form 1 mole of gaseous M⁺ ions.

M(g) → M⁺(g) + e⁻

Second ionisation energy (2nd IE)

The energy required to remove 1 mole of electrons from 1 mole of gaseous M⁺ ions to form 1 mole of gaseous M²⁺ ions.

M⁺(g) → M²⁺(g) + e⁻

Ionisation is an endothermic process, and ionisation energies are positive values, since energy is absorbed during ionisation to overcome the attraction between the electron and the nucleus.

Ionisation energies affect the type of bond an atom forms with other atoms. Elements with low ionisation energies find it easy to lose an electron to form a cation, resulting in ionic bonds being formed.

Trend in Successive Ionisation Energies of an Element

Second IE is always greater than first IE, because more energy is required to remove each subsequent electron.

↑

Successive ionisation energies of one element always increases.

K(g) → K⁺(g) → K²⁺(g) → K³⁺(g) → K⁴⁺(g) → K⁵⁺(g) → K⁶⁺(g)

  • Number of protons remains the same, so nuclear charge remains the same.
  • Number of electrons decreases, so shielding experienced by the remaining outermost electrons decreases.
  • Electrostatic attraction between the nucleus and the remaining electrons increases, resulting in an increase in the energy required to remove each subsequent electron.

A genuinely large jump between two successive IEs signals that the next electron is being pulled from a shell closer to the nucleus, much less shielded and much more strongly attracted. A small jump just signals a change of subshell within the same shell.

Successive ionisation energies of aluminium103104105n = 3 (3 e⁻)n = 2 (8 e⁻)n = 1electron removed (1st, 2nd, 3rd …)lg(IE / kJ mol⁻¹)
Successive ionisation energies of aluminium: two huge jumps mark shell boundaries at 3→4 and 11→12 electrons removed.

Example

Al (Z = 13): 1s²2s²2p⁶ 3s²3p¹

A big jump after the 3rd electron removed, and again after the 11th.

13 electrons split into groups of 3, 8, 2, matching n = 3, n = 2, n = 1.

3 electrons before the first jump → 3 valence electrons → Group 13.

The number of electrons before the first big jump gives the element's group: that number directly for Group 1 or 2, or that number plus 10 for Groups 13 to 18.

  • A large jump between two successive ionisation energies means the next electron removed comes from a completely different, inner electron shell, much less shielded and much more strongly attracted to the nucleus.
  • The number of electrons removed before that jump equals the number of valence electrons the element has.

The same idea extends to the whole dataset: counting every jump in a full set of successive IEs reveals the element's complete electron configuration, since each jump marks a shell boundary and the number of electrons removed within each segment gives that shell's electron count.

Electronegativity

Electronegativity

The electronegativity of an atom in a molecule is a relative measure of its ability to attract bonding electrons.

↑

Across a period, electronegativity increases.

  • The number of electron shells remains the same.
  • The number of protons increases, so nuclear charge increases.
  • The number of electrons also increases, but these electrons are added to the same outermost electron shell, so shielding remains approximately constant.
  • Electrostatic attraction between the nucleus and the bonding electrons increases.
↓

Down a group, electronegativity decreases.

  • The number of electron shells increases.
  • Shielding experienced by bonding electrons increases significantly, as there are more inner-shell electrons.
  • Despite the increasing nuclear charge, electrostatic attraction between the nucleus and the bonding electrons decreases.

When two atoms of similar electronegativity are covalently bonded, a non-polar bond is formed. If the difference between the electronegativities of the two bonding atoms (ΔEN) increases, the covalent bond becomes more polar, and its ionic character also increases. With a sufficiently large difference, the two atoms form an ionic bond instead.

ΔENBond type
< 0.5Nonpolar covalent
0.5 – 1.6Polar covalent
> 2.0Ionic

Metals have low electronegativities and tend to lose electrons, while non-metals have high electronegativity and tend to gain electrons. Electronegativity is closely tied to whether an element behaves as a metal, metalloid or non-metal.